All Blog Comments

Binary - Presenting software on a poster

Binary — Tue, 31 Jan 2012 15:25:46 +0000

Looks good and actually I've never seen that someone is trying to show his software by using posters. Usually it is by using different technologies (computers, projections etc.). The only thing is that under "Scaffold File" it is little bit hard to read because of color but otherwise it looks good. Good job!

ysbearing01 - Presenting software on a poster

ysbearing01 — Fri, 25 Nov 2011 07:08:52 +0000

thank you to share.I like it.

wedding dresses - Dealing With Big Data In Bioinformatics | software | Bioinformatics Zen

wedding dresses — Thu, 10 Nov 2011 08:17:15 +0000

interesting post ,thanks for your sharing ..

wedding dresses - Experiments in Genome Scaffolding and Peer-Review | Bioinformatics Zen

wedding dresses — Thu, 10 Nov 2011 08:16:42 +0000

Article is very interesting,thanks for your sharing..

VinceP - Data analysis using r functions as objects | Bioinformatics Zen

VinceP — Fri, 23 Sep 2011 09:25:24 +0000

Really liked your clear and informative presentation. I've got a challenging data set to work with and this really helped me to move in the right direction. Thanks, Vince

Paul Kelly - Bioinformatics - a wide set of transferable skills | Bioinformatics Zen

Paul Kelly — Sun, 28 Aug 2011 14:05:47 +0000

There is great potential for an alliance with Biomedical Communications aka Biomedical Visualization. Where scientific visualization techniques meet the skills of bioinformatics lies great promise for successful applications of knowledge translation.

YGC - Vim | tools | Bioinformatics Zen

YGC — Thu, 25 Aug 2011 03:15:12 +0000

I prefer emacs for it can run many application, such as R by ESS.

Kieren Lythgow - Bioinformatics - a wide set of transferable skills | Bioinformatics Zen

Kieren Lythgow — Mon, 8 Aug 2011 13:53:01 +0000

I agree and its always in the back of my mind in case things don't work out in research. The blog post by Massimo really strikes a nerve....

michaelbarton - Presenting bioinformatics software as a poster | Bioinformatics Zen

michaelbarton — Fri, 22 Jul 2011 15:20:48 +0000

Thank you again for the suggestion. Dr. Faulkes generously wrote a critique of my poster. http://betterposters.blogspot.com/2011/07/critiqu...

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michaelbarton - Presenting bioinformatics software as a poster | Bioinformatics Zen

michaelbarton — Mon, 18 Jul 2011 19:57:17 +0000

Thank you. That's a good idea.

Guy Leonard - Presenting bioinformatics software as a poster | Bioinformatics Zen

Guy Leonard — Mon, 11 Jul 2011 14:38:32 +0000

Looks very nice, You should submit it to this blog and see if they will feature it http://betterposters.blogspot.com/

michaelbarton - Presenting bioinformatics software as a poster | Bioinformatics Zen

michaelbarton — Sat, 9 Jul 2011 01:27:34 +0000

Cheers! Let me know if I can help.

Kieren Lythgow - Presenting bioinformatics software as a poster | Bioinformatics Zen

Kieren Lythgow — Fri, 8 Jul 2011 15:30:17 +0000

That poster is quality mate. Hopefully I can test Scaffolder out soon.

michaelbarton - Presenting bioinformatics software as a poster | Bioinformatics Zen

michaelbarton — Wed, 6 Jul 2011 16:10:09 +0000

Thanks Jeremy! I hoped it would be appealing and catch the eye of people walking past.

Jeremy Leipzig - Presenting bioinformatics software as a poster | Bioinformatics Zen

Jeremy Leipzig — Wed, 6 Jul 2011 14:59:30 +0000

wow that is like a hundred times more interesting than the average poster. good job!

michaelbarton - Experiments in Genome Scaffolding and Peer-Review | Bioinformatics Zen

michaelbarton — Wed, 15 Jun 2011 19:45:35 +0000

Hi Zhi-Ping Feng, Thank you for your comment. Suggestions and questions for scaffolder are always welcome. 1) This is a good idea. Would you be able to provide an example of the input blast data you have and the expected scaffolder output? Just a few lines to give me an idea of what you specifically mean. 2) The machine code is the SHA1 digest of the generated sequence. For the same scaffold sequence you will always get the same string. The idea behind this was to make it easier to tell if a scaffolded sequence is different just by looking at the header line. You can, of course, set your own definition line for the fasta. Please see the "--definition" command on this UNIX page: http://next.gs/man/scaffolder-sequence. Cheers Mike

Zhi-Ping Feng - Experiments in Genome Scaffolding and Peer-Review | Bioinformatics Zen

Zhi-Ping Feng — Tue, 7 Jun 2011 04:57:49 +0000

The idea is very good and I have tested the Scaffolder for assembly several super_contigs of Tasmania devil genome by reference the de-nova assembly of RNAseq or annotated genes based on human proteins. However, I don't know exactly the size of intron from RNAseq and there are more than 53000 super_contigs, it is impossible for me to manually edit the yml file. Therefore I have 2 suggestions for the further work. 1) add a script that can convert blast tbl output ( which contains the information of the scaffold order and orientation) format to yml format ; 2) add an option to write the header of newly scaffoldered sequences, currently it seems randomly generated machine code (>09d713b74f79612d42936f8f7804209e8900849e) Thanks

hope - Why Write Good Software | software | Bioinformatics Zen

hope — Mon, 14 Mar 2011 19:38:20 +0000

Hi I want to develop some software in bioinformatics?But lacking on ideas..Can anyone suggest some good and effective ideas..Any help would be appreciated.. Thanks

NFLJerseys - Writing Good Code | software | Bioinformatics Zen

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